| Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ... Appl. Environ. Microbiol. 72 (7), 5069-5072, 2006 | 6595 | 2006 |
| Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity P Hugenholtz, BM Goebel, NR Pace Journal of bacteriology 180 (18), 4765-4774, 1998 | 2704 | 1998 |
| An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610, 2012 | 2548 | 2012 |
| Community structure and metabolism through reconstruction of microbial genomes from the environment GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ... Nature 428 (6978), 37, 2004 | 2201 | 2004 |
| Bellerophon: a program to detect chimeric sequences in multiple sequence alignments T Huber, G Faulkner, P Hugenholtz Bioinformatics 20 (14), 2317-2319, 2004 | 1658 | 2004 |
| Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005 | 1568 | 2005 |
| CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome research 25 (7), 1043-1055, 2015 | 1352 | 2015 |
| Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431, 2013 | 1246 | 2013 |
| Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates V Kunin, A Engelbrektson, H Ochman, P Hugenholtz Environmental microbiology 12 (1), 118-123, 2010 | 1175 | 2010 |
| Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560, 2007 | 1168 | 2007 |
| Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86, 2012 | 1144 | 2012 |
| The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541, 2008 | 1070 | 2008 |
| Novel division level bacterial diversity in a Yellowstone hot spring P Hugenholtz, C Pitulle, KL Hershberger, NR Pace Journal of bacteriology 180 (2), 366-376, 1998 | 999 | 1998 |
| NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ... Nucleic acids research 34 (suppl_2), W394-W399, 2006 | 979 | 2006 |
| STAMP: statistical analysis of taxonomic and functional profiles DH Parks, GW Tyson, P Hugenholtz, RG Beiko Bioinformatics 30 (21), 3123-3124, 2014 | 941 | 2014 |
| A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ... Nature 462 (7276), 1056, 2009 | 894 | 2009 |
| Microbial diversity in a hydrocarbon-and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation MA Dojka, P Hugenholtz, SK Haack, NR Pace Appl. Environ. Microbiol. 64 (10), 3869-3877, 1998 | 819 | 1998 |
| Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation GR Crocetti, P Hugenholtz, PL Bond, A Schuler, J Keller, D Jenkins, ... Appl. Environ. Microbiol. 66 (3), 1175-1182, 2000 | 793 | 2000 |
| Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ... Nature biotechnology 31 (6), 533, 2013 | 792 | 2013 |
| CRISPR—a widespread system that provides acquired resistance against phages in bacteria and archaea R Sorek, V Kunin, P Hugenholtz Nature Reviews Microbiology 6 (3), 181, 2008 | 768 | 2008 |
Gene W. TysonProfessor, Australian Centre for Ecogenomics, TheVerified email at uq.edu.au