Philip Hugenholtz
Philip Hugenholtz
Australian Centre for Ecogenomics, SCMB, The University of Queensland
Verified email at uq.edu.au - Homepage
TitleCited byYear
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Appl. Environ. Microbiol. 72 (7), 5069-5072, 2006
65952006
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
P Hugenholtz, BM Goebel, NR Pace
Journal of bacteriology 180 (18), 4765-4774, 1998
27041998
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610, 2012
25482012
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ...
Nature 428 (6978), 37, 2004
22012004
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
T Huber, G Faulkner, P Hugenholtz
Bioinformatics 20 (14), 2317-2319, 2004
16582004
Comparative metagenomics of microbial communities
SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ...
Science 308 (5721), 554-557, 2005
15682005
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson
Genome research 25 (7), 1043-1055, 2015
13522015
Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431, 2013
12462013
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
V Kunin, A Engelbrektson, H Ochman, P Hugenholtz
Environmental microbiology 12 (1), 118-123, 2010
11752010
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560, 2007
11682007
Defining the core Arabidopsis thaliana root microbiome
DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ...
Nature 488 (7409), 86, 2012
11442012
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541, 2008
10702008
Novel division level bacterial diversity in a Yellowstone hot spring
P Hugenholtz, C Pitulle, KL Hershberger, NR Pace
Journal of bacteriology 180 (2), 366-376, 1998
9991998
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ...
Nucleic acids research 34 (suppl_2), W394-W399, 2006
9792006
STAMP: statistical analysis of taxonomic and functional profiles
DH Parks, GW Tyson, P Hugenholtz, RG Beiko
Bioinformatics 30 (21), 3123-3124, 2014
9412014
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056, 2009
8942009
Microbial diversity in a hydrocarbon-and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
MA Dojka, P Hugenholtz, SK Haack, NR Pace
Appl. Environ. Microbiol. 64 (10), 3869-3877, 1998
8191998
Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation
GR Crocetti, P Hugenholtz, PL Bond, A Schuler, J Keller, D Jenkins, ...
Appl. Environ. Microbiol. 66 (3), 1175-1182, 2000
7932000
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ...
Nature biotechnology 31 (6), 533, 2013
7922013
CRISPR—a widespread system that provides acquired resistance against phages in bacteria and archaea
R Sorek, V Kunin, P Hugenholtz
Nature Reviews Microbiology 6 (3), 181, 2008
7682008
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Articles 1–20