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| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 305 | 2023 |
| Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139, 2020 | 179 | 2020 |
| GraphAligner: rapid and versatile sequence-to-graph alignment M Rautiainen, T Marschall Genome biology 21 (1), 1-28, 2020 | 140 | 2020 |
| Telomere-to-telomere assembly of diploid chromosomes with Verkko M Rautiainen, S Nurk, BP Walenz, GA Logsdon, D Porubsky, A Rhie, ... Nature Biotechnology, 1-9, 2023 | 127 | 2023 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... bioRxiv, 2022 | 111 | 2022 |
| Bit-parallel sequence-to-graph alignment M Rautiainen, V Mäkinen, T Marschall Bioinformatics 35 (19), 3599-3607, 2019 | 69 | 2019 |
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| MBG: Minimizer-based sparse de Bruijn Graph construction M Rautiainen, T Marschall Bioinformatics 37 (16), 2476-2478, 2021 | 65 | 2021 |
| Haplotype threading: accurate polyploid phasing from long reads SD Schrinner, RS Mari, J Ebler, M Rautiainen, L Seillier, JJ Reimer, ... Genome biology 21 (1), 1-22, 2020 | 65 | 2020 |
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| AERON: Transcript quantification and gene-fusion detection using long reads M Rautiainen, DA Durai, Y Chen, L Xin, HM Low, J Göke, T Marschall, ... BioRxiv, 2020 | 10 | 2020 |
| Aligning sequences to general graphs in O (V+ mE) time. bioRxiv M Rautiainen, T Marschall Cold Spring Harbor Laboratory, 2017 | 10 | 2017 |
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