Timothy G Vaughan
Timothy G Vaughan
ETH Zürich, Switzerland
Verified email at bsse.ethz.ch
TitleCited byYear
BEAST 2: a software platform for Bayesian evolutionary analysis
R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ...
PLoS computational biology 10 (4), e1003537, 2014
23252014
A Bayesian model predicts the response of axons to molecular gradients
D Mortimer, J Feldner, T Vaughan, I Vetter, Z Pujic, WJ Rosoff, K Burrage, ...
Proceedings of the National Academy of Sciences 106 (25), 10296-10301, 2009
1012009
Einstein-Podolsky-Rosen entanglement strategies in two-well Bose-Einstein condensates
QY He, MD Reid, TG Vaughan, C Gross, M Oberthaler, PD Drummond
Physical review letters 106 (12), 120405, 2011
772011
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Journal of the Royal Society Interface 11 (94), 20131106, 2014
692014
Axon guidance by growth-rate modulation
D Mortimer, Z Pujic, T Vaughan, AW Thompson, J Feldner, I Vetter, ...
Proceedings of the National Academy of Sciences 107 (11), 5202-5207, 2010
662010
Efficient Bayesian inference under the structured coalescent
TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond
Bioinformatics 30 (16), 2272-2279, 2014
592014
Phylodynamics with migration: a computational framework to quantify population structure from genomic data
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Molecular biology and evolution 33 (8), 2102-2116, 2016
382016
A stochastic simulator of birth–death master equations with application to phylodynamics
TG Vaughan, AJ Drummond
Molecular biology and evolution 30 (6), 1480-1493, 2013
342013
Extinction times in autocatalytic systems
PD Drummond, TG Vaughan, AJ Drummond
The Journal of Physical Chemistry A 114 (39), 10481-10491, 2010
262010
Entanglement, number fluctuations and optimized interferometric phase measurement
QY He, TG Vaughan, PD Drummond, MD Reid
New Journal of Physics 14 (9), 093012, 2012
252012
Quantum limits to center-of-mass measurements
T Vaughan, P Drummond, G Leuchs
Physical Review A 75 (3), 033617, 2007
192007
Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial
C Pacioni, H Hunt, ME Allentoft, TG Vaughan, AF Wayne, A Baynes, ...
Molecular ecology 24 (23), 5813-5828, 2015
182015
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?
T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015
172015
Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models
A Popinga, T Vaughan, T Stadler, AJ Drummond
Genetics 199 (2), 595-607, 2015
17*2015
Three-dimensional solitons in coupled atomic-molecular Bose-Einstein condensates
TG Vaughan, KV Kheruntsyan, PD Drummond
Physical Review A 70 (6), 063611, 2004
142004
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2017
92017
Inferring ancestral recombination graphs from bacterial genomic data
TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French
Genetics 205 (2), 857-870, 2017
92017
Drummond AJ. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis
R Bouckaert, J Heled, D Kuhnert, T Vaughan, CH Wu, D Xie, MA Suchard, ...
PLoS computational biology 10 (4), e1003537, 35
935
IcyTree: rapid browser-based visualization for phylogenetic trees and networks
TG Vaughan
Bioinformatics 33 (15), 2392-2394, 2017
82017
Molecular Approaches to Understanding Transmission and Source Attribution in Nontyphoidal Salmonella and Their Application in Africa
AE Mather, TG Vaughan, NP French
Clinical Infectious Diseases 61 (suppl_4), S259-S265, 2015
62015
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Articles 1–20