| Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts X Bai, J Zhang, A Ewing, SA Miller, AJ Radek, DV Shevchenko, ... Journal of Bacteriology 188 (10), 3682-3696, 2006 | 454 | 2006 |
| An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ... Nature 516 (7530), 242-245, 2014 | 293 | 2014 |
| High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes AD Ewing, HH Kazazian Genome research 20 (9), 1262-1270, 2010 | 293 | 2010 |
| Extensive somatic L1 retrotransposition in colorectal tumors S Solyom, AD Ewing, EP Rahrmann, TT Doucet, HH Nelson, MB Burns, ... Genome Research, 2012 | 247 | 2012 |
| Ubiquitous L1 Mosaicism in Hippocampal Neurons KR Upton, DJ Gerhardt, JS Jesuadian, SR Richardson, ... Cell 161 (2), 228-239, 2015 | 245 | 2015 |
| Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria SC Slater, BS Goldman, B Goodner, JC Setubal, SK Farrand, EW Nester, ... Journal of bacteriology 191 (8), 2501-2511, 2009 | 228 | 2009 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 211 | 2015 |
| Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ... Cell 173 (6), 1356-1369. e22, 2018 | 170 | 2018 |
| Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans AD Ewing, HH Kazazian Genome research 21 (6), 985-990, 2011 | 141 | 2011 |
| Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution AD Ewing, A Gacita, LD Wood, F Ma, D Xing, MS Kim, SS Manda, G Abril, ... Genome research 25 (10), 1536-1545, 2015 | 107 | 2015 |
| Transposable element detection from whole genome sequence data AD Ewing Mobile DNA 6 (1), 24, 2015 | 105 | 2015 |
| Exon-trapping mediated by the human retrotransposon SVA DC Hancks, AD Ewing, JE Chen, K Tokunaga, HH Kazazian Genome research 19 (11), 1983-1991, 2009 | 99 | 2009 |
| Retrotransposition of gene transcripts leads to structural variation in mammalian genomes AD Ewing, TJ Ballinger, D Earl, CC Harris, L Ding, RK Wilson, D Haussler Genome Biology 14 (3), R22, 2013 | 86 | 2013 |
| RADIA: RNA and DNA integrated analysis for somatic mutation detection AJ Radenbaugh, S Ma, A Ewing, JM Stuart, EA Collisson, J Zhu, ... PloS one 9 (11), e111516, 2014 | 75 | 2014 |
| Heritable L1 retrotransposition in the mouse primordial germline and early embryo SR Richardson, P Gerdes, DJ Gerhardt, FJ Sanchez-Luque, GO Bodea, ... Genome research 27 (8), 1395-1405, 2017 | 57 | 2017 |
| Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles PK Mandal, AD Ewing, DC Hancks, HH Kazazian Jr Human molecular genetics 22 (18), 3730-3748, 2013 | 39 | 2013 |
| Global optimization of somatic variant identification in cancer genomes with a global community challenge PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ... Nature genetics 46 (4), 318-319, 2014 | 38 | 2014 |
| L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis SN Schauer, PE Carreira, R Shukla, DJ Gerhardt, P Gerdes, ... Genome research 28 (5), 639-653, 2018 | 37 | 2018 |
| Pathogenic orphan transduction created by a nonreference LINE‐1 retrotransposon S Solyom, AD Ewing, DC Hancks, Y Takeshima, H Awano, M Matsuo, ... Human mutation 33 (2), 369-371, 2012 | 37 | 2012 |
| LINE-1 evasion of epigenetic repression in humans FJ Sanchez-Luque, MJHC Kempen, P Gerdes, DB Vargas-Landin, ... Molecular cell 75 (3), 590-604. e12, 2019 | 33 | 2019 |
