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Adam Ewing
Adam Ewing
Mater Research Institute, University of Queensland
Verified email at mater.uq.edu.au
Title
Cited by
Cited by
Year
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
X Bai, J Zhang, A Ewing, SA Miller, A Jancso Radek, DV Shevchenko, ...
Journal of bacteriology 188 (10), 3682-3696, 2006
4832006
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ...
Nature 516 (7530), 242-245, 2014
3682014
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
AD Ewing, HH Kazazian
Genome research 20 (9), 1262-1270, 2010
3322010
Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ...
Cell 173 (6), 1356-1369. e22, 2018
2952018
Ubiquitous L1 Mosaicism in Hippocampal Neurons
KR Upton, DJ Gerhardt, JS Jesuadian, SR Richardson, ...
Cell 161 (2), 228-239, 2015
2952015
Extensive somatic L1 retrotransposition in colorectal tumors
S Solyom, AD Ewing, EP Rahrmann, TT Doucet, HH Nelson, MB Burns, ...
Genome Research, 2012
2722012
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2622015
Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria
SC Slater, BS Goldman, B Goodner, JC Setubal, SK Farrand, EW Nester, ...
Journal of bacteriology 191 (8), 2501-2511, 2009
2512009
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
AD Ewing, HH Kazazian
Genome research 21 (6), 985-990, 2011
1532011
Transposable element detection from whole genome sequence data
AD Ewing
Mobile DNA 6 (1), 1-9, 2015
1282015
Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
AD Ewing, A Gacita, LD Wood, F Ma, D Xing, MS Kim, SS Manda, G Abril, ...
Genome research 25 (10), 1536-1545, 2015
1242015
Exon-trapping mediated by the human retrotransposon SVA
DC Hancks, AD Ewing, JE Chen, K Tokunaga, HH Kazazian
Genome research 19 (11), 1983-1991, 2009
1182009
Retrotransposition of gene transcripts leads to structural variation in mammalian genomes
AD Ewing, TJ Ballinger, D Earl, CC Harris, L Ding, RK Wilson, D Haussler
Genome Biology 14 (3), R22, 2013
992013
RADIA: RNA and DNA integrated analysis for somatic mutation detection
AJ Radenbaugh, S Ma, A Ewing, JM Stuart, EA Collisson, J Zhu, ...
PloS one 9 (11), e111516, 2014
882014
Heritable L1 retrotransposition in the mouse primordial germline and early embryo
SR Richardson, P Gerdes, DJ Gerhardt, FJ Sanchez-Luque, GO Bodea, ...
Genome research 27 (8), 1395-1405, 2017
762017
LINE-1 evasion of epigenetic repression in humans
FJ Sanchez-Luque, MJHC Kempen, P Gerdes, DB Vargas-Landin, ...
Molecular cell 75 (3), 590-604. e12, 2019
612019
L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis
SN Schauer, PE Carreira, R Shukla, DJ Gerhardt, P Gerdes, ...
Genome research 28 (5), 639-653, 2018
572018
Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles
PK Mandal, AD Ewing, DC Hancks, HH Kazazian Jr
Human molecular genetics 22 (18), 3730-3748, 2013
522013
Nanopore sequencing enables comprehensive transposable element epigenomic profiling
AD Ewing, N Smits, FJ Sanchez-Luque, J Faivre, PM Brennan, ...
Molecular Cell 80 (5), 915-928. e5, 2020
512020
A community effort to create standards for evaluating tumor subclonal reconstruction
A Salcedo, M Tarabichi, SMG Espiritu, AG Deshwar, M David, NM Wilson, ...
Nature biotechnology 38 (1), 97-107, 2020
452020
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