Mark Diekhans
Mark Diekhans
University of California, Santa Cruz; UC Santa Cruz Genomics Institute
Verified email at soe.ucsc.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10876*2012
Initial sequencing and comparative analysis of the mouse genome
RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, ...
Nature 420 (6915), 520-562, 2002
71432002
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
35712012
The UCSC genome browser database
D Karolchik, R Baertsch, M Diekhans, TS Furey, A Hinrichs, YT Lu, ...
Nucleic acids research 31 (1), 51-54, 2003
16342003
The UCSC genome browser database: update 2011
PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ...
Nucleic acids research 39 (suppl_1), D876-D882, 2010
11782010
The UCSC genome browser database: update 2006
AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ...
Nucleic acids research 34 (suppl_1), D590-D598, 2006
8732006
The UCSC genome browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
8712015
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
M Stanke, M Diekhans, R Baertsch, D Haussler
Bioinformatics 24 (5), 637-644, 2008
8132008
The UCSC Genome Browser database: extensions and updates 2013
LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ...
Nucleic acids research 41 (D1), D64-D69, 2012
7802012
The UCSC genome browser database: 2014 update
D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ...
Nucleic acids research 42 (D1), D764-D770, 2014
7072014
ENCODE data in the UCSC Genome Browser: year 5 update
KR Rosenbloom, CA Sloan, VS Malladi, TR Dreszer, K Learned, ...
Nucleic acids research 41 (D1), D56-D63, 2012
7022012
The UCSC genome browser database: update 2010
B Rhead, D Karolchik, RM Kuhn, AS Hinrichs, AS Zweig, PA Fujita, ...
Nucleic acids research 38 (suppl_1), D613-D619, 2010
6852010
A discriminative framework for detecting remote protein homologies
T Jaakkola, M Diekhans, D Haussler
Journal of computational biology 7 (1-2), 95-114, 2000
6382000
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
5742007
Using the Fisher kernel method to detect remote protein homologies.
TS Jaakkola, M Diekhans, D Haussler
ISMB 99, 149-158, 1999
5611999
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)
DS Gerhard, L Wagner, EA Feingold, CM Shenmen, LH Grouse, ...
Genome research 14 (10 B), 2121-2127, 2004
5542004
The UCSC known genes
F Hsu, WJ Kent, H Clawson, RM Kuhn, M Diekhans, D Haussler
Bioinformatics 22 (9), 1036-1046, 2006
5462006
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ...
Human molecular genetics 23 (22), 5866-5878, 2014
5442014
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
KD Pruitt, J Harrow, RA Harte, C Wallin, M Diekhans, DR Maglott, ...
Genome research 19 (7), 1316-1323, 2009
5432009
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5172011
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Articles 1–20