Genivaldo Gueiros Z. Silva
TitleCited byYear
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
Nature communications 5, 4498, 2014
2942014
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063, 2017
2082017
Lytic to temperate switching of viral communities
B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ...
Nature 531 (7595), 466, 2016
1722016
Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals
GD Garcia, GB Gregoracci, EO Santos, PM Meirelles, GGZ Silva, ...
Microbial ecology 65 (4), 1076-1086, 2013
702013
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards
PeerJ 2, e425, 2014
632014
Oxygen minimum zones harbour novel viral communities with low diversity
N Cassman, A Prieto‐Davó, K Walsh, GGZ Silva, F Angly, S Akhter, ...
Environmental microbiology 14 (11), 3043-3065, 2012
622012
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data
GGZ Silva, KT Green, BE Dutilh, RA Edwards
Bioinformatics 32 (3), 354-361, 2015
562015
Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis
AE Trindade-Silva, C Rua, GGZ Silva, BE Dutilh, APB Moreira, ...
PLoS One 7 (7), e39905, 2012
532012
Combining de novo and reference-guided assembly with scaffold_builder
GGZ Silva, BE Dutilh, TD Matthews, K Elkins, R Schmieder, EA Dinsdale, ...
Source code for biology and medicine 8 (1), 23, 2013
472013
Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome
LS de Oliveira, GB Gregoracci, GGZ Silva, LT Salgado, G Amado Filho, ...
BMC genomics 13 (1), 487, 2012
452012
Multi-analytical approach reveals potential microbial indicators in soil for sugarcane model systems
AA Navarrete, TR Diniz, LPP Braga, GGZ Silva, JC Franchini, R Rossetto, ...
PLoS One 10 (6), e0129765, 2015
302015
Genomic taxonomy of the genus Prochlorococcus
CC Thompson, GGZ Silva, NM Vieira, R Edwards, ACP Vicente, ...
Microbial ecology 66 (4), 752-762, 2013
292013
Microbial community diversity and physical–chemical features of the Southwestern Atlantic Ocean
NA Junior, PM Meirelles, E de Oliveira Santos, B Dutilh, GGZ Silva, ...
Archives of microbiology 197 (2), 165-179, 2015
262015
Polyketide synthase gene diversity within the microbiome of the sponge Arenosclera brasiliensis, endemic to the Southern Atlantic Ocean
AE Trindade-Silva, CPJ Rua, BGN Andrade, ACP Vicente, GGZ Silva, ...
Appl. Environ. Microbiol. 79 (5), 1598-1605, 2013
252013
Genomic comparison of the closely-related Salmonella enterica serovars Enteritidis, Dublin and Gallinarum
TD Matthews, R Schmieder, GGZ Silva, J Busch, N Cassman, BE Dutilh, ...
PLoS One 10 (6), e0126883, 2015
212015
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ...
BMC genomics 15 (1), 654, 2014
212014
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
YW Lim, DA Cuevas, GGZ Silva, K Aguinaldo, EA Dinsdale, AF Haas, ...
PeerJ 2, e520, 2014
182014
Complete genome sequencing of a multidrug-resistant and human-invasive Salmonella enterica serovar Typhimurium strain of the emerging sequence type 213 genotype
E Calva, C Silva, MB Zaidi, A Sanchez-Flores, K Estrada, GGZ Silva, ...
Genome Announc. 3 (3), e00663-15, 2015
112015
Chemical profiling of two congeneric sea mat corals along the Brazilian coast: adaptive and functional patterns
LV Costa-Lotufo, F Carnevale-Neto, AE Trindade-Silva, RR Silva, ...
Chemical communications 54 (16), 1952-1955, 2018
102018
Bacterial community associated with the reef coral Mussismilia braziliensis's momentum boundary layer over a diel cycle
CB Silveira, GB Gregoracci, FH Coutinho, GGZ Silva, JM Haggerty, ...
Frontiers in microbiology 8, 784, 2017
102017
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Articles 1–20