Genivaldo Gueiros Z. Silva
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A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
Nature communications 5 (1), 1-11, 2014
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
Lytic to temperate switching of viral communities
B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ...
Nature 531 (7595), 466-470, 2016
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data
GGZ Silva, KT Green, BE Dutilh, RA Edwards
Bioinformatics 32 (3), 354-361, 2016
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards
PeerJ 2, e425, 2014
Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals
GD Garcia, GB Gregoracci, EO Santos, PM Meirelles, GGZ Silva, ...
Microbial ecology 65 (4), 1076-1086, 2013
Oxygen minimum zones harbour novel viral communities with low diversity
N Cassman, A Prieto‐Davó, K Walsh, GGZ Silva, F Angly, S Akhter, ...
Environmental microbiology 14 (11), 3043-3065, 2012
Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome
LS de Oliveira, GB Gregoracci, GGZ Silva, LT Salgado, G Amado Filho, ...
BMC genomics 13 (1), 1-13, 2012
Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis
AE Trindade-Silva, C Rua, GGZ Silva, BE Dutilh, APB Moreira, ...
PLoS One 7 (7), e39905, 2012
Combining de novo and reference-guided assembly with scaffold_builder
GGZ Silva, BE Dutilh, TD Matthews, K Elkins, R Schmieder, EA Dinsdale, ...
Source code for biology and medicine 8 (1), 1-5, 2013
Multi-analytical approach reveals potential microbial indicators in soil for sugarcane model systems
AA Navarrete, TR Diniz, LPP Braga, GGZ Silva, JC Franchini, R Rossetto, ...
PLoS One 10 (6), e0129765, 2015
Genomic taxonomy of the genus Prochlorococcus
CC Thompson, GGZ Silva, NM Vieira, R Edwards, ACP Vicente, ...
Microbial ecology 66 (4), 752-762, 2013
Microbial community diversity and physical–chemical features of the Southwestern Atlantic Ocean
NA Junior, PM Meirelles, E de Oliveira Santos, B Dutilh, GGZ Silva, ...
Archives of microbiology 197 (2), 165-179, 2015
Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum
TD Matthews, R Schmieder, GGZ Silva, J Busch, N Cassman, BE Dutilh, ...
PloS one 10 (6), e0126883, 2015
Polyketide synthase gene diversity within the microbiome of the sponge Arenosclera brasiliensis, endemic to the Southern Atlantic Ocean
AE Trindade-Silva, CPJ Rua, BGN Andrade, ACP Vicente, GGZ Silva, ...
Applied and environmental microbiology 79 (5), 1598-1605, 2013
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ...
BMC genomics 15 (1), 1-11, 2014
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
B Papudeshi, JM Haggerty, M Doane, MM Morris, K Walsh, DT Beattie, ...
BMC genomics 18 (1), 1-13, 2017
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
YW Lim, DA Cuevas, GGZ Silva, K Aguinaldo, EA Dinsdale, AF Haas, ...
PeerJ 2, e520, 2014
Bacterial community associated with the reef coral Mussismilia braziliensis's momentum boundary layer over a diel cycle
CB Silveira, GB Gregoracci, FH Coutinho, GGZ Silva, JM Haggerty, ...
Frontiers in microbiology 8, 784, 2017
Acidobacteria subgroups and their metabolic potential for carbon degradation in sugarcane soil amended with vinasse and nitrogen fertilizers
MG de Chaves, GGZ Silva, R Rossetto, RA Edwards, SM Tsai, ...
Frontiers in microbiology 10, 1680, 2019
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Articles 1–20