| Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20, 1-21, 2019 | 464 | 2019 |
| Spatial multi-omic map of human myocardial infarction C Kuppe*, ROR Flores*, Z Li*, S Hayat, RT Levinson, X Liao, MT Hannani, ... Nature 608 (7924), 766–777, 2022 | 379 | 2022 |
| Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen Z Li*, C Kuppe*, S Ziegler, M Cheng, N Kabgani, S Menzel, M Zenke, ... Nature communications 12 (1), 1-14, 2021 | 102* | 2021 |
| Mutations and variants of ONECUT1 in diabetes A Philippi*, S Heller*, IG Costa*, V Senée*, M Breunig, Z Li, G Kwon, ... Nature Medicine 27 (11), 1928-1940, 2021 | 41 | 2021 |
| Adult human kidney organoids originate from CD24+ cells and represent an advanced model for adult polycystic kidney disease Y Xu*, C Kuppe*, J Perales-Patón, S Hayat, J Kranz, AT Abdallah, J Nagai, ... Nature Genetics 54 (11), 1690-1701, 2022 | 37 | 2022 |
| Transcriptional changes and the role of ONECUT1 in hPSC pancreatic differentiation S Heller, Z Li, Q Lin, R Geusz, M Breunig, M Hohwieler, X Zhang, GG Nair, ... Communications biology 4 (1), 1298, 2021 | 26 | 2021 |
| Deciphering the impact of genomic variation on function Code of Conduct Committee (alphabetical by last name) Cody Sarah 33 Farrell ... Nature 633 (8028), 47-57, 2024 | 21* | 2024 |
| Accelerating differential evolution based on a subset-to-subset survivor selection operator J Guo, Z Li, S Yang Soft Computing 23, 4113–4130, 2019 | 16 | 2019 |
| Benchmarking computational methods to identify spatially variable genes and peaks Z Li, ZM Patel, D Song, G Yan, JJ Li, L Pinello Biorxiv, 2023 | 13 | 2023 |
| scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference Z Li, J Nagai, C Kuppe, R Kramann, IG Costa Filho Bioinformatics Advances 3 (1), 2023 | 13 | 2023 |
| MOJITOO: a fast and universal method for integration of multimodal single cell data M Cheng, Z Li, IG Costa Filho Bioinformatics 38 (Supplement_1), i282–i289, 2022 | 12 | 2022 |
| A lncRNA identifies Irf8 enhancer element in negative feedback control of dendritic cell differentiation H Xu, Z Li, CC Kuo, K Götz, T Look, MAS de Toledo, K Seré, IG Costa, ... Elife 12, e83342, 2023 | 10 | 2023 |
| RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data Z Li, CC Kuo, F Ticconi, M Shaigan, J Gehrmann, EG Gusmao, M Allhoff, ... BMC bioinformatics 24 (1), 79, 2023 | 10 | 2023 |
| Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification J Ryu, S Barkal, T Yu, M Jankowiak, Y Zhou, M Francoeur, QV Phan, Z Li, ... Nature Genetics, 1-13, 2024 | 9 | 2024 |
| Single cell multi-omics of fibrotic kidney reveal epigenetic regulation of antioxidation and apoptosis within proximal tubule Z Chen, L Ye, M Zhu, C Xia, J Fan, H Chen, Z Li, S Mou Cellular and Molecular Life Sciences 81 (1), 56, 2024 | 4 | 2024 |
| Improving the JADE algorithm by clustering successful parameters Z Li, J Guo, S Yang International Journal of Wireless and Mobile Computing 11 (3), 190-197, 2016 | 3 | 2016 |
| Dissipative differential evolution with self-adaptive control parameters J Guo, Z Li, W Xie, H Wang 2015 IEEE Congress on Evolutionary Computation (CEC), 3088-3095, 2015 | 1 | 2015 |
| Mapping spatially-resolved transcriptomes in systemic sclerosis Z Li, AR Rigau, W Xie, L Huang, X Shao, YN Li, AE Matei, W Ye, H Zou, ... bioRxiv, 2025.01. 14.632962, 2025 | | 2025 |
| CREB determines the expression of ST2 in Tregs and mediates the balance between type 1 and type 2 immune responses SH Subramanyam, J Hriczko, S Schulz, T Look, T Goodarzi, T Clarner, ... bioRxiv, 2024.06. 29.601312, 2024 | | 2024 |
| Deaminase-mediated chromatin accessibility profiling with single-allele resolution T Yu, Z Li, E Gibbs, R Iwase, MJ Francoeur, Q Phan, J Zhao, J Rosin, ... bioRxiv, 2024.12. 17.628768, 2024 | | 2024 |
Ivan G. CostaProfessor, Institute of Computational Genomics, RWTH AachenVerified email at rwth-aachen.de
