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Alexander G. McFarland
Alexander G. McFarland
Bioinformatician, University of Pennsylvania
Verified email at u.northwestern.edu - Homepage
Title
Cited by
Cited by
Year
Antimicrobial chemicals associate with microbial function and antibiotic resistance indoors
AK Fahimipour, S Ben Maamar, AG McFarland, RA Blaustein, J Chen, ...
MSystems 3 (6), 10.1128/msystems. 00200-18, 2018
63*2018
Pangenomic approach to understanding microbial adaptations within a model built environment, the International Space Station, relative to human hosts and soil
RA Blaustein, AG McFarland, S Ben Maamar, A Lopez, S Castro-Wallace, ...
MSystems 4 (1), 10.1128/msystems. 00281-18, 2019
412019
The pseudophosphatase MK-STYX induces neurite-like outgrowths in PC12 cells
BM Flowers, LE Rusnak, KE Wong, DA Banks, MR Munyikwa, ...
PLoS One 9 (12), e114535, 2014
242014
MK-STYX alters the morphology of primary neurons, and outgrowths in MK-STYX overexpressing PC-12 cells develop a neuronal phenotype
DA Banks, A Dahal, AG McFarland, BM Flowers, CA Stephens, B Swack, ...
Frontiers in molecular biosciences 4, 76, 2017
222017
Toward accurate and robust environmental surveillance using metagenomics
J Shen, AG McFarland, VB Young, MK Hayden, EM Hartmann
Frontiers in Genetics 12, 600111, 2021
172021
Structure and functional attributes of bacterial communities in premise plumbing across the United States
TM Webster, A McFarland, MJ Gebert, AM Oliverio, LM Nichols, RR Dunn, ...
Environmental Science & Technology 55 (20), 14105-14114, 2021
162021
Triclosan Tolerance Is Driven by a Conserved Mechanism in Diverse Pseudomonas Species
AG McFarland, HK Bertucci, E Littman, J Shen, C Huttenhower, ...
Applied and Environmental Microbiology 87 (7), e02924-20, 2021
92021
Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors. mSystems 3
AK Fahimipour, S Benmaamar, AG McFarland, RA Blaustein, J Chen, ...
62018
Mosaic ends tagmentation (METa) assembly for highly efficient construction of functional metagenomic libraries
TS Crofts, AG McFarland, EM Hartmann
Msystems 6 (3), 10.1128/msystems. 00524-21, 2021
52021
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics
J Shen, AG McFarland, RA Blaustein, LJ Rose, KA Perry-Dow, ...
Microbiome 10 (1), 206, 2022
42022
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper
AG McFarland, NW Kennedy, CE Mills, D Tullman-Ercek, C Huttenhower, ...
Bioinformatics 38 (3), 612-620, 2022
32022
The HIV-1 Capsid-Targeted Inhibitor GSK878 Alters Selection of Target Sites for HIV DNA Integration
KA Marquis, J Everett, A Cantu, A McFarland, S Sherrill-Mix, M Krystal, ...
AIDS Research and Human Retroviruses 40 (2), 114-126, 2024
12024
Mosaic Ends Tagmentation (METa) assembly for extremely efficient construction of functional metagenomic libraries
TS Crofts, AG McFarland, EM Hartmann
bioRxiv, 2021.02. 01.429292, 2021
12021
The virome of the kitome: small circular virus-like genomes in laboratory reagents
J Duan, E Keeler, A McFarland, P Scott, RG Collman, FD Bushman
Microbiology Resource Announcements, e01261-23, 2024
2024
An improved workflow for healthcare environmental surveillance using metagenomics
J Shen, AG McFarland, RA Blaustein, LJ Rose, KA Perry-Dow, ...
2023
Employing Evolutionary History and Genetic Context to Better Infer Gene Function in Metagenomic and Whole-Genome Sequencing Data
AG McFarland
Northwestern University, 2021
2021
Blind Spots in Methods Based on Cultivation and Metagenomic Sequencing for Surface Microbiomes in a Medical Intensive Care Unit
J Shen, A McFarland, R Blaustein, M Hayden, V Young, E Hartmann
Infection Control & Hospital Epidemiology 41 (S1), s141-s142, 2020
2020
Discovery of Mobile Triclosan Tolerance Genes in Pseudomonas Using High-throughput Conserved Gene Synteny Analysis
AG McFarland, HK Bertucci, E Littman, J Shen, C Huttenhower, ...
ASM Microbe 2020, 2020
2020
Fab Isozyme Determines High or Low Triclosan Tolerance in Diverse Members of Pseudomonas
AG McFarland, E Bertucci, Hanna K, Littman, J Shen, C Huttenhower, ...
ASM microbe 2020, 2020
2020
Pseudophosphatase MK‐STYX regulates neurite outgrowth and alters the morphology of primary neurons
SD Hinton, D Banks, A Dahal, A McFarland, B Flowers, C Stephens, ...
The FASEB Journal 32, 533.31-533.31, 2018
2018
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Articles 1–20