| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016 | 3637 | 2016 |
| Best practices for analysing microbiomes. DPC Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J ... Nat Rev Microbiol 16 (7), 410-422, 2018 | 1633 | 2018 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 1010 | 2020 |
| Microbiome-wide association studies link dynamic microbial consortia to disease R Gilbert, Jack, Quinn, Robert A., Debelius, Justine, Xu, Zhenjiang Z ... Nature 535 (7610), 94-103, 2016 | 777 | 2016 |
| Challenges in microbial ecology: building predictive understanding of community function and dynamics S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ... The ISME journal 10 (11), 2557-2568, 2016 | 705 | 2016 |
| Illuminating the Dark Matter in Metabolomics R Da Silva, P Dorrestein, R Quinn PNAS 112 (41), 12549–12550, 2015 | 529 | 2015 |
| Global chemical effects of the microbiome include new bile-acid conjugations RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ... Nature 579 (7797), 123-129, 2020 | 459 | 2020 |
| Microbial transformations of human bile acids DV Guzior, RA Quinn Microbiome 9 (1), 140, 2021 | 400 | 2021 |
| Molecular networking as a drug discovery, drug metabolism, and precision medicine strategy RA Quinn, LF Nothias, O Vining, M Meehan, E Esquenazi, PC Dorrestein Trends in pharmacological sciences 38 (2), 143-154, 2017 | 360 | 2017 |
| Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019 | 256 | 2019 |
| Balance trees reveal microbial niche differentiation JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ... mSystems 2 (1), 10.1128/mSystems.00162-16, 2017 | 232 | 2017 |
| Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity RH Mills, PS Dulai, Y Vázquez-Baeza, C Sauceda, N Daniel, RR Gerner, ... Nature microbiology 7 (2), 262-276, 2022 | 211 | 2022 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 205 | 2020 |
| Involvement of the gut microbiota and barrier function in glucocorticoid‐induced osteoporosis JD Schepper, F Collins, ND Rios‐Arce, HJ Kang, L Schaefer, ... Journal of Bone and Mineral Research 35 (4), 801-820, 2020 | 142 | 2020 |
| Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2, 3-butanedione fermentation KL Whiteson, S Meinardi, YW Lim, R Schmieder, H Maughan, R Quinn, ... The ISME journal 8 (6), 1247-1258, 2014 | 140 | 2014 |
| Real-time metabolomics on living microorganisms using ambient electrospray ionization flow-probe CC Hsu, MS ElNaggar, Y Peng, J Fang, LM Sanchez, SJ Mascuch, ... Analytical chemistry 85 (15), 7014-7018, 2013 | 130 | 2013 |
| Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung RA Quinn, YW Lim, H Maughan, D Conrad, F Rohwer, KL Whiteson MBio 5 (2), 10.1128/mbio. 00956-13, 2014 | 128 | 2014 |
| The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography KL Whiteson, B Bailey, M Bergkessel, D Conrad, L Delhaes, B Felts, ... American journal of respiratory and critical care medicine 189 (11), 1309-1315, 2014 | 123 | 2014 |
| Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data AA Aksenov, I Laponogov, Z Zhang, SLF Doran, I Belluomo, D Veselkov, ... Nature biotechnology 39 (2), 169-173, 2021 | 119 | 2021 |
| A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation RA Quinn, K Whiteson, YW Lim, P Salamon, B Bailey, S Mienardi, ... The ISME journal 9 (4), 1024-1038, 2015 | 111 | 2015 |
Pieter C DorresteinUCSDVerified email at ucsd.edu
