| Geodiversity and endemism in the iconic Australian Pilbara region: a review of landscape evolution and biotic response in an ancient refugium M Pepper, P Doughty, JS Keogh Journal of Biogeography 40 (7), 1225-1239, 2013 | 102 | 2013 |
| Palaeoclimate change drove diversification among isolated mountain refugia in the Australian arid zone M Pepper, MK Fujita, C Moritz, JS Keogh Molecular Ecology 20 (7), 1529-1545, 2011 | 87 | 2011 |
| Molecular phylogeny and phylogeography of the Australian Diplodactylus stenodactylus (Gekkota; Reptilia) species-group based on mitochondrial and nuclear genes reveals an … M Pepper, P Doughty, JS Keogh Molecular Phylogenetics and Evolution 41 (3), 539-555, 2006 | 73 | 2006 |
| Biogeography of the Kimberley, Western Australia: a review of landscape evolution and biotic response in an ancient refugium M Pepper, J Scott Keogh Journal of Biogeography 41 (8), 1443-1455, 2014 | 71 | 2014 |
| The genetic legacy of aridification: climate cycling fostered lizard diversification in Australian montane refugia and left low-lying deserts genetically depauperate M Pepper, SYW Ho, MK Fujita, JS Keogh Molecular Phylogenetics and Evolution 61 (3), 750-759, 2011 | 66 | 2011 |
| Multilocus phylogeography reveals nested endemism in a gecko across the monsoonal tropics of Australia C Moritz, MK Fujita, D Rosauer, R Agudo, G Bourke, P Doughty, R Palmer, ... Molecular ecology 25 (6), 1354-1366, 2016 | 60 | 2016 |
| Ancient drainages divide cryptic species in Australia’s arid zone: Morphological and multi-gene evidence for four new species of Beaked Geckos (Rhynchoedura) M Pepper, P Doughty, MN Hutchinson, JS Keogh Molecular Phylogenetics and Evolution 61 (3), 810-822, 2011 | 57 | 2011 |
| Landforms predict phylogenetic structure on one of the world's most ancient surfaces M Pepper, P Doughty, R Arculus, JS Keogh BMC Evolutionary Biology 8, 1-7, 2008 | 44 | 2008 |
| Life in the “dead heart” of Australia: The geohistory of the Australian deserts and its impact on genetic diversity of arid zone lizards M Pepper, JS Keogh Journal of Biogeography 48 (4), 716-746, 2021 | 41 | 2021 |
| Independent transitions between monsoonal and arid biomes revealed by systematic revison of a complex of Australian geckos (Diplodactylus; Diplodactylidae) PM Oliver, PJ Couper, M Pepper PloS one 9 (12), e111895, 2014 | 40 | 2014 |
| Speciation on the rocks: integrated systematics of the Heteronotia spelea species complex (Gekkota; Reptilia) from western and central Australia M Pepper, P Doughty, MK Fujita, C Moritz, JS Keogh PLoS One 8 (11), e78110, 2013 | 36 | 2013 |
| A multi-locus molecular phylogeny for Australia’s iconic Jacky Dragon (Agamidae: Amphibolurus muricatus): Phylogeographic structure along the Great Dividing Range of south … M Pepper, MD Barquero, MJ Whiting, JS Keogh Molecular Phylogenetics and Evolution 71, 149-156, 2014 | 25 | 2014 |
| A return-on-investment approach for prioritization of rigorous taxonomic research needed to inform responses to the biodiversity crisis J Melville, DG Chapple, JS Keogh, J Sumner, A Amey, P Bowles, ... PLoS biology 19 (6), e3001210, 2021 | 21 | 2021 |
| Morphological and molecular assessment of the Diplodactylus savagei species complex in the Pilbara region, Western Australia, with a description of a new species P Doughty, M Pepper, JS Keogh Zootaxa 2393 (1), 33–45-33–45, 2010 | 21 | 2010 |
| Phylogeographic structure across one of the largest intact tropical savannahs: Molecular and morphological analysis of Australia’s iconic frilled lizard Chlamydosaurus kingii M Pepper, DG Hamilton, T Merkling, N Svedin, B Cser, RA Catullo, ... Molecular phylogenetics and evolution 106, 217-227, 2017 | 19 | 2017 |
| Conspicuously concealed: revision of the arid clade of the Gehyra variegata (Gekkonidae) group in Western Australia using an integrative molecular and morphological approach … L Kealley, P Doughty, M Pepper, JS Keogh, M Hillyer, J Huey PeerJ 6, e5334, 2018 | 15 | 2018 |
| Speciation in the mountains and dispersal by rivers: Molecular phylogeny of Eulamprus water skinks and the biogeography of Eastern Australia M Pepper, J Sumner, IG Brennan, K Hodges, AR Lemmon, EM Lemmon, ... Journal of Biogeography 45 (9), 2040-2052, 2018 | 11 | 2018 |
| Spots before the eyes: revision of the saxicoline geckos of the Gehyra punctata (Squamata: Gekkonidae) species complex in the Pilbara region of Western Australia. P Doughty, AM Bauer, M Pepper, JS Keogh Records of the Western Australian Museum 33 (1), 2018 | 10 | 2018 |
| A new species of spectacularly coloured flat lizard Platysaurus (Squamata: Cordylidae: Platysaurinae) from southern Africa MJ Whiting, WR Branch, M Pepper, JS Keogh Zootaxa 3986 (2), 173-192, 2015 | 9 | 2015 |
| The genetic legacy of aridification: Miocene refugia fostered diversification while Pleistocene climate cycles erased diversity in desert lizards M Pepper, S Ho, MK Fujita, JS Keogh Molecular Phylogenetics and Evolution 61, 750-759, 2011 | 9 | 2011 |
