Andreas Hellander

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i10-index	26	23

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Linda PetzoldProfessor, University of California Santa BarbaraVerified email at cs.ucsb.edu
Per Lötstedtprofessor in numerical analysis, Uppsala UniversityVerified email at it.uu.se
Brian DrawertComputer Science, University of North Carolina - AshevilleVerified email at unca.edu
Stefan EngblomUppsala UniversityVerified email at it.uu.se
Stefan HellanderUppsala UniversityVerified email at it.uu.se
Salman ToorUppsala University, ScaleoutSystemsVerified email at it.uu.se
Marc SturrockRoyal College of Surgeons in IrelandVerified email at rcsi.com
Mark AJ ChaplainGregory Chair of Applied Mathematics, School of Mathematics and Statistics, University of St AndrewsVerified email at st-andrews.ac.uk
Dan GillespieVerified email at mailaps.org
Giovanni BellesiaRoche Sequencing SolutionsVerified email at roche.com
Michael J LawsonCalifornia Institute of TechnologyVerified email at caltech.edu
Bernie J. Daigle, Jr.Assistant Professor of Biological Sciences and Computer Science at The University of MemphisVerified email at memphis.edu
Igor AdameykoKarolinska Institutet, Sweden; Medical University of Vienna, AustriaVerified email at ki.se
Markus HeglandThe Australian National UniversityVerified email at anu.edu.au
Erik ElmrothProfessor & Head of Department of Computing Science, Umeå University; and Co-Founder, Elastisys ABVerified email at cs.umu.se
P-O ÖstbergDepartment of Computing Science, Umeå UniversityVerified email at cs.umu.se
Michael TrogdonResearch Associate, Salk Institute for Biological StudiesVerified email at salk.edu
Michael J. LawsonSenior Research Scientist, National Renewable Energy LaboratoryVerified email at nrel.gov

Andreas Hellander

Associate Professor in Scientific Computing, Division of Scientific Computing, Department of

Verified email at it.uu.se - Homepage

Computational Systems Biology Scientific Computing Cloud Computing Data Science


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Perspective: Stochastic algorithms for chemical kinetics DT Gillespie, A Hellander, LR Petzold The Journal of chemical physics 138 (17), 05B201_1, 2013	288	2013
Simulation of stochastic reaction-diffusion processes on unstructured meshes S Engblom, L Ferm, A Hellander, P Lötstedt SIAM Journal on Scientific Computing 31 (3), 1774-1797, 2009	166	2009
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries B Drawert, S Engblom, A Hellander BMC systems biology 6 (1), 1-17, 2012	146	2012
Hybrid method for the chemical master equation A Hellander, P Lötstedt Journal of Computational Physics 227 (1), 100-122, 2007	94	2007
Reaction-diffusion master equation in the microscopic limit S Hellander, A Hellander, L Petzold Physical Review E 85 (4), 042901, 2012	71	2012
An adaptive algorithm for simulation of stochastic reaction–diffusion processes L Ferm, A Hellander, P Lötstedt Journal of Computational Physics 229 (2), 343-360, 2010	69	2010
Spatial stochastic modelling of the Hes1 gene regulatory network: intrinsic noise can explain heterogeneity in embryonic stem cell differentiation M Sturrock, A Hellander, A Matzavinos, MAJ Chaplain Journal of The Royal Society Interface 10 (80), 20120988, 2013	68*	2013
A hierarchy of approximations of the master equation scaled by a size parameter L Ferm, P Lötstedt, A Hellander Journal of Scientific Computing 34 (2), 127-151, 2008	67	2008
Coupled mesoscopic and microscopic simulation of stochastic reaction-diffusion processes in mixed dimensions A Hellander, S Hellander, P Lötstedt Multiscale Modeling & Simulation 10 (2), 585-611, 2012	54	2012
Stochastic simulation service: bridging the gap between the computational expert and the biologist B Drawert, A Hellander, B Bales, D Banerjee, G Bellesia, BJ Daigle Jr, ... PLoS computational biology 12 (12), e1005220, 2016	45	2016
Analysis of neural crest–derived clones reveals novel aspects of facial development M Kaucka, E Ivashkin, D Gyllborg, T Zikmund, M Tesarova, J Kaiser, M Xie, ... Science advances 2 (8), e1600060, 2016	44	2016
Sparse grids and hybrid methods for the chemical master equation M Hegland, A Hellander, P Lötstedt BIT Numerical Mathematics 48 (2), 265-283, 2008	41	2008
Reaction rates for mesoscopic reaction-diffusion kinetics S Hellander, A Hellander, L Petzold Physical Review E 91 (2), 023312, 2015	39	2015
Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage M Kaucka, T Zikmund, M Tesarova, D Gyllborg, A Hellander, J Jaros, ... Elife 6, e25902, 2017	30	2017
GillesPy: a python package for stochastic model building and simulation JH Abel, B Drawert, A Hellander, LR Petzold IEEE life sciences letters 2 (3), 35-38, 2016	30	2016
Molns: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using pyurdme B Drawert, M Trogdon, S Toor, L Petzold, A Hellander SIAM Journal on Scientific Computing 38 (3), C179-C202, 2016	30	2016
The role of dimerisation and nuclear transport in the Hes1 gene regulatory network M Sturrock, A Hellander, S Aldakheel, L Petzold, MAJ Chaplain Bulletin of mathematical biology 76 (4), 766-798, 2014	28	2014
URDME v. 1.1: User’s manual B Drawert, S Engblom, A Hellander	25*	2011
Local error estimates for adaptive simulation of the reaction–diffusion master equation via operator splitting A Hellander, MJ Lawson, B Drawert, L Petzold Journal of computational physics 266, 89-100, 2014	21	2014
Efficient computation of transient solutions of the chemical master equation based on uniformization and quasi-Monte Carlo A Hellander The Journal of chemical physics 128 (15), 154109, 2008	20	2008

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