Pratik Jagtap
Pratik Jagtap
Research Assistant Professor, University of Minnesota
Verified email at - Homepage
TitleCited byYear
A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective
S Rendulic, P Jagtap, A Rosinus, M Eppinger, C Baar, C Lanz, H Keller, ...
Science 303 (5658), 689-692, 2004
Complete genome sequence and analysis of Wolinella succinogenes
C Baar, M Eppinger, G Raddatz, J Simon, C Lanz, O Klimmek, ...
Proceedings of the National Academy of Sciences 100 (20), 11690-11695, 2003
A two‐step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
P Jagtap, J Goslinga, JA Kooren, T McGowan, MS Wroblewski, ...
Proteomics 13 (8), 1352-1357, 2013
Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators …
VG Keshamouni, P Jagtap, G Michailidis, JR Strahler, R Kuick, AK Reka, ...
Journal of proteome research 8 (1), 35-47, 2009
Deep metaproteomic analysis of human salivary supernatant
P Jagtap, T McGowan, S Bandhakavi, ZJ Tu, S Seymour, TJ Griffin, ...
Proteomics 12 (7), 992-1001, 2012
Multi-omic data analysis using Galaxy
J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ...
Nature biotechnology 33 (2), 137-139, 2015
Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides
DW Mahoney, TM Therneau, CJ Heppelmann, LA Higgins, LM Benson, ...
Journal of proteome research 10 (9), 4325-4333, 2011
Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework
PD Jagtap, JE Johnson, G Onsongo, FW Sadler, K Murray, Y Wang, ...
Journal of proteome research 13 (12), 5898-5908, 2014
Adaptation to low temperature and regulation of gene expression in Antarctic psychrotrophic bacteria
MK Ray, GS Kumar, K Janiyani, K Kannan, P Jagtap, MK Basu, S Shivaji
Journal of biosciences 23 (4), 423-435, 1998
Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations
GM Sheynkman, JE Johnson, PD Jagtap, MR Shortreed, G Onsongo, ...
BMC genomics 15 (1), 703, 2014
Early events of Bacillus anthracis germination identified by time‐course quantitative proteomics
P Jagtap, G Michailidis, R Zielke, AK Walker, N Patel, JR Strahler, A Driks, ...
Proteomics 6 (19), 5199-5211, 2006
Metaproteomic analysis using the Galaxy framework
PD Jagtap, A Blakely, K Murray, S Stewart, J Kooren, JE Johnson, ...
Proteomics 15 (20), 3553-3565, 2015
Proteomic Profiles in Acute Respiratory Distress Syndrome Differentiates Survivors from Non-Survivors.
WCH Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B ...
PLoS One 9 (10), doi: 10.1371/journal.pone.0109713, 2014
Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
JD Rudney, PD Jagtap, CS Reilly, R Chen, TW Markowski, LA Higgins, ...
Microbiome 3 (1), 69, 2015
Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics
KL Vermillion, P Jagtap, JE Johnson, TJ Griffin, MT Andrews
Journal of proteome research 14 (11), 4792-4804, 2015
Proteogenomic analysis of a hibernating mammal indicates contribution of skeletal muscle physiology to the hibernation phenotype
KJ Anderson, KL Vermillion, P Jagtap, JE Johnson, TJ Griffin, ...
Journal of proteome research 15 (4), 1253-1261, 2016
Iron-sparing response of Mycobacterium avium subsp. paratuberculosis is strain dependent
HK Janagama, JP Bannantine, A Kugadas, P Jagtap, LA Higgins, ...
BMC microbiology 10 (1), 268, 2010
Novel in situ collection of tumor interstitial fluid from a head and neck squamous carcinoma reveals a unique proteome with diagnostic potential
MD Stone, RM Odland, T McGowan, G Onsongo, C Tang, NL Rhodus, ...
Clinical proteomics 6 (3), 75-82, 2010
Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery
JA Kooren, NL Rhodus, C Tang, PD Jagtap, BJ Horrigan, TJ Griffin
Clinical proteomics 8 (1), 13, 2011
Workflow for analysis of high mass accuracy salivary data set using M ax Q uant and P rotein P ilot search algorithm
P Jagtap, S Bandhakavi, LA Higgins, T McGowan, R Sa, MD Stone, ...
Proteomics 12 (11), 1726-1730, 2012
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