Alice Carolyn McHardy
Title
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Cited by
Year
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
17602005
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
12352007
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
J Kalinowski, B Bathe, D Bartels, N Bischoff, M Bott, A Burkovski, N Dusch, ...
Journal of biotechnology 104 (1-3), 5-25, 2003
9612003
GenDB—an open source genome annotation system for prokaryote genomes
F Meyer, A Goesmann, AC McHardy, D Bartels, T Bekel, J Clausen, ...
Nucleic acids research 31 (8), 2187-2195, 2003
7402003
Defining seasonal marine microbial community dynamics
JA Gilbert, JA Steele, JG Caporaso, L Steinbrück, J Reeder, B Temperton, ...
The ISME journal 6 (2), 298-308, 2012
6672012
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
HG Martin, N Ivanova, V Kunin, F Warnecke, KW Barry, AC McHardy, ...
Nature biotechnology 24 (10), 1263-1269, 2006
6672006
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
HG Martin, N Ivanova, V Kunin, F Warnecke, KW Barry, AC McHardy, ...
Nature biotechnology 24 (10), 1263-1269, 2006
6672006
Accurate phylogenetic classification of variable-length DNA fragments
AC McHardy, HG Martín, A Tsirigos, P Hugenholtz, I Rigoutsos
Nature methods 4 (1), 63-72, 2007
5322007
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
LZ Holland, R Albalat, K Azumi, È Benito-Gutiérrez, MJ Blow, ...
Genome research 18 (7), 1100-1111, 2008
4802008
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
PJ Turnbaugh, C Quince, JJ Faith, AC McHardy, T Yatsunenko, F Niazi, ...
Proceedings of the National Academy of Sciences 107 (16), 7503-7508, 2010
4712010
Functional overlap of the Arabidopsis leaf and root microbiota
Y Bai, DB Müller, G Srinivas, R Garrido-Oter, E Potthoff, M Rott, ...
Nature 528 (7582), 364-369, 2015
4252015
Structure and function of the bacterial root microbiota in wild and domesticated barley
D Bulgarelli, R Garrido-Oter, PC Münch, A Weiman, J Dröge, Y Pan, ...
Cell host & microbe 17 (3), 392-403, 2015
4202015
Complete genome sequence of the myxobacterium Sorangium cellulosum
S Schneiker, O Perlova, O Kaiser, K Gerth, A Alici, MO Altmeyer, D Bartels, ...
Nature biotechnology 25 (11), 1281-1289, 2007
3912007
Complete genome sequence of the myxobacterium Sorangium cellulosum
S Schneiker, O Perlova, O Kaiser, K Gerth, A Alici, MO Altmeyer, D Bartels, ...
Nature biotechnology 25 (11), 1281-1289, 2007
3912007
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
K Mavromatis, N Ivanova, K Barry, H Shapiro, E Goltsman, AC McHardy, ...
Nature methods 4 (6), 495-500, 2007
3662007
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
S Schneiker, VAPM dos Santos, D Bartels, T Bekel, M Brecht, ...
Nature biotechnology 24 (8), 997-1004, 2006
3632006
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
S Schneiker, VAPM dos Santos, D Bartels, T Bekel, M Brecht, ...
Nature biotechnology 24 (8), 997-1004, 2006
3632006
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
F Thieme, R Koebnik, T Bekel, C Berger, J Boch, D Büttner, C Caldana, ...
Journal of bacteriology 187 (21), 7254-7266, 2005
3582005
Microbiota and host nutrition across plant and animal kingdoms
S Hacquard, R Garrido-Oter, A González, S Spaepen, G Ackermann, ...
Cell host & microbe 17 (5), 603-616, 2015
2812015
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
2682017
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