| Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome” H Tettelin, V Masignani, MJ Cieslewicz, C Donati, D Medini, NL Ward, ... Proceedings of the National Academy of Sciences 102 (39), 13950-13955, 2005 | 2606 | 2005 |
| The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 CR Buell, V Joardar, M Lindeberg, J Selengut, IT Paulsen, ML Gwinn, ... Proceedings of the National Academy of Sciences 100 (18), 10181-10186, 2003 | 1049 | 2003 |
| Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ... Applied and environmental microbiology 75 (7), 2046-2056, 2009 | 1004 | 2009 |
| Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments BA Methe, KE Nelson, JA Eisen, IT Paulsen, W Nelson, JF Heidelberg, ... Science 302 (5652), 1967-1969, 2003 | 859 | 2003 |
| The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough JF Heidelberg, R Seshadri, SA Haveman, CL Hemme, IT Paulsen, ... Nature biotechnology 22 (5), 554-559, 2004 | 715 | 2004 |
| Comparative genomics of emerging human ehrlichiosis agents JC Dunning Hotopp, M Lin, R Madupu, J Crabtree, SV Angiuoli, J Eisen, ... PLoS genetics 2 (2), e21, 2006 | 576 | 2006 |
| Structural flexibility in the Burkholderia mallei genome WC Nierman, D DeShazer, HS Kim, H Tettelin, KE Nelson, T Feldblyum, ... Proceedings of the National Academy of Sciences 101 (39), 14246-14251, 2004 | 463 | 2004 |
| Whole-Genome Sequence Analysis of Pseudomonas syringae pv. phaseolicola 1448A Reveals Divergence among Pathovars in Genes Involved in Virulence and … V Joardar, M Lindeberg, RW Jackson, J Selengut, R Dodson, LM Brinkac, ... Journal of bacteriology 187 (18), 6488-6498, 2005 | 414 | 2005 |
| Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ... Genome biology 14, 1-15, 2013 | 323 | 2013 |
| CoreGenes: a computational tool for identifying and cataloging" core" genes in a set of small genomes N Zafar, R Mazumder, D Seto BMC bioinformatics 3, 1-8, 2002 | 155 | 2002 |
| Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome EP Hamilton, A Kapusta, PE Huvos, SL Bidwell, N Zafar, H Tang, ... elife 5, e19090, 2016 | 141 | 2016 |
| Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size … V Joardar, NF Abrams, J Hostetler, PJ Paukstelis, S Pakala, SB Pakala, ... BMC genomics 13, 1-12, 2012 | 128 | 2012 |
| The comprehensive microbial resource T Davidsen, E Beck, A Ganapathy, R Montgomery, N Zafar, Q Yang, ... Nucleic acids research 38 (suppl_1), D340-D345, 2010 | 124 | 2010 |
| Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3 L Losada, SB Pakala, ND Fedorova, V Joardar, SA Shabalina, J Hostetler, ... FEMS microbiology letters 352 (2), 165-173, 2014 | 101 | 2014 |
| Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics DH Haft, JD Selengut, LM Brinkac, N Zafar, O White Bioinformatics 21 (3), 293-306, 2005 | 95 | 2005 |
| The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data DM Tanenbaum, J Goll, S Murphy, P Kumar, N Zafar, M Thiagarajan, ... Standards in genomic sciences 2, 229-237, 2010 | 78 | 2010 |
| Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus JH Badger, TR Hoover, YV Brun, RM Weiner, MT Laub, G Alexandre, ... Journal of bacteriology 188 (19), 6841-6850, 2006 | 69 | 2006 |
| Draft genome sequence of the plant-pathogenic soil fungus Rhizoctonia solani anastomosis group 3 strain Rhs1AP MA Cubeta, E Thomas, RA Dean, S Jabaji, SM Neate, S Tavantzis, ... Genome announcements 2 (5), 10.1128/genomea. 01072-14, 2014 | 59 | 2014 |
| Hidden genomic evolution in a morphospecies—the landscape of rapidly evolving genes in Tetrahymena J Xiong, W Yang, K Chen, C Jiang, Y Ma, X Chai, G Yan, G Wang, D Yuan, ... PLoS biology 17 (6), e3000294, 2019 | 35 | 2019 |
| Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA L Losada, BM Barker, S Pakala, S Pakala, V Joardar, N Zafar, S Mounaud, ... Mycopathologia 178, 331-339, 2014 | 32 | 2014 |
