| Nextclade: clade assignment, mutation calling and quality control for viral genomes I Aksamentov, C Roemer, EB Hodcroft, RA Neher Journal of open source software 6 (67), 3773, 2021 | 591 | 2021 |
| COVID-19 Scenarios: an interactive tool to explore the spread and associated morbidity and mortality of SARS-CoV-2 NB Noll, I Aksamentov, V Druelle, A Badenhorst, B Ronzani, G Jefferies, ... MedRxiv, 2020.05. 05.20091363, 2020 | 66 | 2020 |
| Deep neural networks predict remaining surgery duration from cholecystectomy videos I Aksamentov, AP Twinanda, D Mutter, J Marescaux, N Padoy Medical Image Computing and Computer-Assisted Intervention− MICCAI 2017 …, 2017 | 47 | 2017 |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes. J Open Source Softw 6: 3773 I Aksamentov, C Roemer, EB Hodcroft, RA Neher Preprint at, 2021 | 27 | 2021 |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes. J Open Source Softw. 2021; 6: 3773 I Aksamentov, C Roemer, EB Hodcroft, RA Neher | 18 | |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes. JOSS 6: 3773 I Aksamentov, C Roemer, EB Hodcroft, RA Neher | 10 | 2021 |
| Clade assignment, mutation calling and quality control for viral genomes., 2021, 6 I Aksamentov, C Roemer, EB Hodcroft, RAN Nextclade DOI: https://doi. org/10.21105/joss 3773, 3773, 0 | 10 | |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes. J Open Source Softw. 2021; 6 (67): 3773 I Aksamentov, C Roemer, EB Hodcroft, RA Neher | 10 | |
| COVID-19 Scenarios: an interactive tool to explore the spread and associated morbidity and mortality of SARS-CoV-2. medRxiv. 2020 NB Noll, I Aksamentov, V Druelle, A Badenhorst, B Ronzani, G Jefferies, ... Google Scholar, 0 | 10 | |
| COVID-19 scenarios R Neher, I Aksamentov, N Noll, H Albert, R Dyrdak Accessed, 2020 | 8 | 2020 |
| Nextclade I Aksamentov, R Neher Viral Genome Clade Assignment, Mutation Calling, and Sequence Quality Checks …, 2020 | 8 | 2020 |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes. J. Open Source Softw. 6 (67), 3773 I Aksamentov, C Roemer, EB Hodcroft, RA Neher | 6 | 2021 |
| Nextclade: clade assignment, mutation calling and quality control for viral genomes. Zenodo 2021 I Aksamentov, C Roemer, EB Hodcroft, RA Neher | 6 | |
| Nextclade: Clade assignment, mutation calling and I Aksamentov, C Roemer, EB Hodcroft, RA Neher | 1 | 2021 |
| COVID-19 Scenarios: an interactive tool to explore the spread and associated morbidity and mortality of SARS-CoV-2 (preprint) NB Noll, I Aksamentov, V Druelle, A Badenhorst, B Ronzani, G Jefferies, ... | 1 | 2020 |
| Leveraging tools from Nextstrain for bespoke phylogenetic analysis of viral pathogen epidemics BI Potter, J Huddleston, C Roemer, E Harkins, I Aksamentov, J Hadfield, ... Mathematical and Computational Evolutionary Biology, Location: Chateau d'Oex …, 2023 | | 2023 |
