| Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression Nature Genetics, 2021 | 1172* | 2021 |
| scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data J Alquicira-Hernandez, A Sathe, HP Ji, Q Nguyen, JE Powell Genome biology 20, 1-17, 2019 | 304 | 2019 |
| Benchmarking of cell type deconvolution pipelines for transcriptomics data F Avila Cobos, J Alquicira-Hernandez, JE Powell, P Mestdagh, ... Nature communications 11 (1), 5650, 2020 | 294 | 2020 |
| Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease S Yazar, J Alquicira-Hernandez, K Wing, A Senabouth, MG Gordon, ... Science 376 (6589), eabf3041, 2022 | 197 | 2022 |
| Nebulosa recovers single-cell gene expression signals by kernel density estimation J Alquicira-Hernandez, JE Powell Bioinformatics, 2021 | 146 | 2021 |
| Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ... Genome biology 17, 1-14, 2016 | 123 | 2016 |
| Rail-RNA: scalable analysis of RNA-seq splicing and coverage A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, ... Bioinformatics 33 (24), 4033-4040, 2017 | 79 | 2017 |
| ascend: R package for analysis of single-cell RNA-seq data A Senabouth, SW Lukowski, JA Hernandez, SB Andersen, X Mei, ... GigaScience 8 (8), giz087, 2019 | 46 | 2019 |
| DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets SB Wilson, SE Howden, JM Vanslambrouck, A Dorison, ... Genome Medicine 14 (1), 19, 2022 | 25 | 2022 |
| Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19 WH Khoo, K Jackson, C Phetsouphanh, JJ Zaunders, ... Clinical Immunology 246, 109209, 2023 | 16 | 2023 |
| No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease J Alquicira‐Hernandez, JE Powell, TG Phan Clinical & Translational Immunology 10 (7), e1308, 2021 | 11 | 2021 |
| Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution JB Kang, AZ Shen, S Gurajala, A Nathan, L Rumker, VRC Aguiar, ... Nature genetics 55 (12), 2255-2268, 2023 | 10 | 2023 |
| Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression regulation in immune cells R Oelen, DH de Vries, H Brugge, G Gordon, M Vochteloo, ... bioRxiv, 2021.06. 04.447088, 2021 | 6 | 2021 |
| Programmatic access to bacterial regulatory networks with regutools J Chávez, C Barberena-Jonas, JE Sotelo-Fonseca, ... Bioinformatics 36 (16), 4532-4534, 2020 | 5 | 2020 |
| scPred: single cell prediction using singular value decomposition and machine learning classification J Alquicira-Hernandez, Q Nguyen, JE Powell bioRxiv, 369538, 2018 | 5 | 2018 |
| Identifying genetic variants that influence the abundance of cell states in single-cell data L Rumker, S Sakaue, Y Reshef, JB Kang, S Yazar, J Alquicira-Hernandez, ... bioRxiv, 2023 | | 2023 |
| EP16. 03-041 Single Cell RNA Sequencing Reveals Phenotypic Predispositions to Developing Lung Cancer in Never-Smokers V Chin, H Arora, A Senabouth, JA Hernandez, R McCloy, J Simes, ... Journal of Thoracic Oncology 17 (9), S608, 2022 | | 2022 |
| Understanding genetic control of gene expression and its role in disease at a single cell resolution J Alquicira Hernandez | | 2022 |
| Clonal dynamics of SARS-CoV-2-specific T cells in children and adults with COVID-19 WH Khoo, K Jackson, C Phetsouphanh, JJ Zaunders, ... bioRxiv, 2022.01. 30.478400, 2022 | | 2022 |
| P196 Quantizinghla-class-II (HLACII) peptidomic parameters as immunologically-relevantendophenotypes toimproveimmunogenicity risk prediction for protein therapeutics … V Diego, B Luu, M Almeida, M Hofmann, J Hernandez, A Morelli, A Ameri, ... Human Immunology 78, 202-203, 2017 | | 2017 |
Joseph E PowellGarvan Institute of Medical Research and University of New South WalesVerified email at garvan.org.au
