Andreas R. Gruber
Andreas R. Gruber
Paperpile LLC
Verified email at paperpile.com - Homepage
Title
Cited by
Cited by
Year
The vienna RNA websuite
AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker
Nucleic acids research 36 (suppl_2), W70-W74, 2008
15032008
RNAalifold: improved consensus structure prediction for RNA alignments
SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler
BMC bioinformatics 9 (1), 474, 2008
5022008
Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length
G Martin, AR Gruber, W Keller, M Zavolan
Cell Reports 1 (6), 753-763, 2012
2832012
RNAz 2.0: improved noncoding RNA detection
AR Gruber, S Findeiss, S Washietl, IL Hofacker, PF Stadler
Pacific Symposium on Biocomputing 15, 69-79, 2010
2542010
Structured RNAs in the ENCODE selected regions of the human genome
S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ...
Genome research 17 (6), 852-864, 2007
1952007
AREsite: a database for the comprehensive investigation of AU-rich elements
AR Gruber, J Fallmann, F Kratochvill, P Kovarik, IL Hofacker
Nucleic acids research 39 (suppl_1), D66-D69, 2010
1662010
An updated human snoRNAome
H Jorjani, S Kehr, DJ Jedlinski, R Gumienny, J Hertel, PF Stadler, ...
Nucleic acids research 44 (11), 5068-5082, 2016
1312016
Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33
L Schönemann, U Kühn, G Martin, P Schäfer, AR Gruber, W Keller, ...
Genes & development 28 (21), 2381-2393, 2014
1302014
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs
D Zünd, AR Gruber, M Zavolan, O Mühlemann
Nature structural & molecular biology 20 (8), 936, 2013
1292013
Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan
Genome biology 16 (1), 150, 2015
1242015
A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and …
AJ Gruber, R Schmidt, AR Gruber, G Martin, S Ghosh, M Belmadani, ...
Genome research 26 (8), 1145-1159, 2016
1122016
Cleavage Factor Im is a key regulator of 3′ UTR length
AR Gruber, G Martin, W Keller, M Zavolan
RNA Biology 9 (12), 1405-1412, 2012
1092012
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures
AR Gruber, R Neuböck, IL Hofacker, S Washietl
Nucleic acids research 35 (suppl_2), W335-W338, 2007
1082007
Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells
AR Gruber, G Martin, P Müller, A Schmidt, AJ Gruber, R Gumienny, ...
Nature communications 5 (1), 1-10, 2014
1022014
Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing
S Kishore, AR Gruber, DJ Jedlinski, AP Syed, H Jorjani, M Zavolan
Genome biology 14 (5), R45, 2013
972013
Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation
F Kratochvill, C Machacek, C Vogl, F Ebner, V Sedlyarov, AR Gruber, ...
Molecular Systems Biology 7 (1), 2011
932011
Strategies for measuring evolutionary conservation of RNA secondary structures
AR Gruber, SH Bernhart, IL Hofacker, S Washietl
BMC bioinformatics 9 (1), 122, 2008
862008
Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors
AR Gruber, G Martin, W Keller, M Zavolan
Wiley Interdisciplinary Reviews: RNA 5 (2), 183-196, 2014
792014
The ViennaRNA web services
AR Gruber, SH Bernhart, R Lorenz
RNA bioinformatics, 307-326, 2015
702015
Characterization of Chelonus inanitus polydnavirus segments: sequences and analysis, excision site and demonstration of clusteringThe EMBL accession numbers of the sequences …
S Wyder, A Tschannen, A Hochuli, A Gruber, V Saladin, S Zumbach, ...
Journal of general virology 83 (1), 247-256, 2002
452002
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Articles 1–20