Kotaro Nakanishi
Kotaro Nakanishi
Department of Chemistry and Biochemistry, The Ohio State University
Verified email at osu.edu - Homepage
Title
Cited by
Cited by
Year
EGFR modulates microRNA maturation in response to hypoxia through phosphorylation of AGO2
J Shen, W Xia, YB Khotskaya, L Huo, K Nakanishi, SO Lim, Y Du, Y Wang, ...
Nature 497 (7449), 383-387, 2013
3292013
Structure of yeast Argonaute with guide RNA
K Nakanishi, DE Weinberg, DP Bartel, DJ Patel
Nature 486 (7403), 368-374, 2012
2912012
The evolutionary journey of Argonaute proteins
DC Swarts, K Makarova, Y Wang, K Nakanishi, RF Ketting, EV Koonin, ...
Nature structural & molecular biology 21 (9), 743, 2014
2672014
Anatomy of RISC: how do small RNAs and chaperones activate Argonaute proteins?
K Nakanishi
Wiley Interdisciplinary Reviews: RNA 7 (5), 637-660, 2016
1242016
ERK activation globally downregulates miRNAs through phosphorylating exportin-5
HL Sun, R Cui, JK Zhou, K Teng, YH Hsiao, K Nakanishi, M Fassan, Z Luo, ...
Cancer cell 30 (5), 723-736, 2016
852016
Eukaryote-specific insertion elements control human ARGONAUTE slicer activity
K Nakanishi, M Ascano, T Gogakos, S Ishibe-Murakami, AA Serganov, ...
Cell reports 3 (6), 1893-1900, 2013
812013
Structural basis for anticodon recognition by methionyl-tRNA synthetase
K Nakanishi, Y Ogiso, T Nakama, S Fukai, O Nureki
Nature structural & molecular biology 12 (10), 931-932, 2005
802005
The inside-out mechanism of Dicers from budding yeasts
DE Weinberg, K Nakanishi, DJ Patel, DP Bartel
Cell 146 (2), 262-276, 2011
712011
Recent progress of structural biology of tRNA processing and modification.
K Nakanishi, O Nureki
Molecules & Cells (Springer Science & Business Media BV) 19 (2), 2005
642005
Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase
K Nakanishi, L Bonnefond, S Kimura, T Suzuki, R Ishitani, O Nureki
Nature 461 (7267), 1144-1148, 2009
592009
Human Argonaute3 has slicer activity
MS Park, HD Phan, F Busch, SH Hinckley, JA Brackbill, VH Wysocki, ...
Nucleic acids research 45 (20), 11867-11877, 2017
482017
Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain
K Nakanishi, S Fukai, Y Ikeuchi, A Soma, Y Sekine, T Suzuki, O Nureki
Proceedings of the National Academy of Sciences 102 (21), 7487-7492, 2005
472005
GW182-Free microRNA Silencing Complex Controls Post-transcriptional Gene Expression during Caenorhabditis elegans Embryogenesis
G Jannot, P Michaud, M Quévillon Huberdeau, L Morel-Berryman, ...
PLoS genetics 12 (12), e1006484, 2016
232016
Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
S Yajima, K Nakanishi, K Takahashi, T Ogawa, M Hidaka, Y Kezuka, ...
Biochemical and biophysical research communications 322 (3), 966-973, 2004
172004
Multidomain convergence of Argonaute during RISC assembly correlates with the formation of internal water clusters
MS Park, R Araya-Secchi, JA Brackbill, HD Phan, AC Kehling, ...
Molecular cell 75 (4), 725-740. e6, 2019
112019
Conformational and chemical selection by a trans-acting editing domain
EM Danhart, M Bakhtina, WA Cantara, AB Kuzmishin, X Ma, BL Sanford, ...
Proceedings of the National Academy of Sciences 114 (33), E6774-E6783, 2017
112017
Argonaute-based programmable RNase as a tool for cleavage of highly-structured RNA
DM Dayeh, WA Cantara, JP Kitzrow, K Musier-Forsyth, K Nakanishi
Nucleic acids research 46 (16), e98-e98, 2018
82018
Structural and functional analyses reveal the contributions of the C-and N-lobes of Argonaute protein to selectivity of RNA target cleavage
DM Dayeh, BC Kruithoff, K Nakanishi
Journal of Biological Chemistry 293 (17), 6308-6325, 2018
62018
Cloning and Identification of Recombinant Argonaute-Bound Small RNAs Using Next-Generation Sequencing
P Gangras, DM Dayeh, JW Mabin, K Nakanishi, G Singh
Argonaute Proteins, 1-28, 2018
62018
Human Argonaute2 and Argonaute3 are catalytically activated by different lengths of guide RNA
MS Park, GY Sim, AC Kehling, K Nakanishi
Proceedings of the National Academy of Sciences 117 (46), 28576-28578, 2020
32020
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Articles 1–20